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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 1e-48
 Query name: gi|1035243985|ref|XP_008319971.2| PREDICTED: redox-regulatory protein FAM213A-like [Cynoglossus semilaevis]
 Query range: 1-211  (total 213)

 Target: /data/www-rg/seblastian_results/430939526/tempfiles/temptarget.fasta
 Chromosome: OMLM01011960.1:subseq_84787,52184_ Strand: +
 Positions:
 -Exon 1  49757        49901
 -Exon 2  50085        50176
 -Exon 3  50277        50417
 -Exon 4  50535        50699
 -Exon 5  50778        50867

 Redox box: YES

Query   MVTVTAVLKFFSLFVAELISSITDWFQTKPAWAKLEVLEDTELKTTGGV <---Intron---> HERHKAKTLWEKTGAVVMVVRRPGULLCRE <---
        ||||| |||  |||||||||||||||||||||| |||||/|||| | || <   183bp    > /|/ ||||||||||||/||||||||||||| <   
Target  MVTVTMVLKAVSLFVAELISSITDWFQTKPAWANLEVLENTELKPTEGV                YEKQKAKTLWEKTGAVIMVVRRPGULLCRE     
        agagaagcaggactgggcaataagttcaacgtgacggcgaagcacaggg                tgacagaactgaagggaaggcccgtcttag     
        ttctctttactgtttcattgctcagtacaccgcatattaacataccag                taaaaacactgaacgctttttggcggttgga     
        ggtgcgcggagcgttagcccccacgcgcgaagccaagggcaaggctat                ctgaggcgtaggatatgcgttggtaaagcag     
                                                                                                 *          

Query   Intron---> EAAELSSLKSQLQELEVPLFAVVKENLGKELDCFKRFFSGKVYVDQQ <---Intron---> RNFYGPQERWMFLSMFLRIGVWRNIW
        100bp    > |||||||||||||||||||||||||||| ||/|||//|||||||||/ <   117bp    > ||||||| |||||||||||||| |||
Target             EAAELSSLKSQLQELEVPLFAVVKENLGNELNCFKKYFSGKVYVDQK                RNFYGPQTRWMFLSMFLRIGVWMNIW
                   ggggcttcatcccgcggcctgggagacgagcattaatttgagtggca                aattgccactatctatccaggtaaat
                   accatcctacataatatcttcttaaatgaatagtaaatcgatataaa                gatagcacggtttctttgtgtgtatg
                   gttggctggcgggatactcctggaactctggcccggcctggttgcgg                atccctaagggtccgtatttgggtcg
                                                                                                            

Query   RAYRRGYRGNMKGEGLVLGGVFVIGPGEQ <---Intron---> GVRLEHREMEFGDKVNMLAVLRTARNMCDN
        ||/|/|/|||//||| /||||||||||/| <    78bp    > || ||||| |||/| |/||||/||| | |/
Target  RAHRKGFRGNLRGEGFILGGVFVIGPGDQ                GVLLEHREKEFGNKANLLAVLKTARKMRDD
        agcaagtagacagggtacgggtgagcggc                ggtcgccgagtgaagattggcaagcaacgg
        gcagagtggatggagtttggttttgcgaa                gtttaagaaatgaacattcttaccgatgaa
        gccggccgacaataatcatactctgattg                ttgggcagggtgtagtggagcaaccagatc
                                                                                   
 Sequence until next stop: 
ATGGCAAGATAG
 M  A  R  * 

 Distance CDS-SECIS: 268 ; UGA-SECIS: 679

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01011960.1:subseq_84787,52184_ Strand = + Positions = 51136 - 51212
 Found by:  Infernal (score=31.46) Covels (score=30.69)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.81

         ..(((((((.......(((((((((((((((...............))))))))))))))).............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         (({(((((..--....{[[((({((((((((.....---.......))))))))})))]]}.........-....)))))}))
 target  UUUUGUGCAU--UUAAUGAAGAUCUGUUUCUAAACU---CUGCUGAGGGAACAGCUCUGAUGUUAUAUAA-CUUGGCACACAA
                         ****           ^^^                       ****